Hi Tammy,
I can't see that it goes into fullscreen? (based on the screenshots).
The "MORT" title bar is shown, which is what I want to avoid.
As I see it, the only difference between your two apps is that the old one used a template (that is why the Design Studio logo is shown) and the new one doesn't.
I am running BI 4.1 SP4, Design Studio 1.3 (have not applied hotfix yet) and latest SAP Business Objects Mobile (6.0.6, which they released a few days ago). I have added it to Mobile category, but not MobileDesigned as I currently do not have that option available on the server.